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  "Title": "Ecological Restoration Planning",
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  "Description": "Flexible framework for ecological restoration planning. It\naims to identify priority areas for restoration efforts using\noptimization algorithms (based on Justeau-Allaire et al. 2021\n<doi:10.1111/1365-2664.13803>). Priority areas can be\nidentified by maximizing landscape indices, such as the\neffective mesh size (Jaeger 2000\n<doi:10.1023/A:1008129329289>), or the integral index of\nconnectivity (Pascual-Hortal & Saura 2006\n<doi:10.1007/s10980-006-0013-z>). Additionally, constraints can\nbe used to ensure that priority areas exhibit particular\ncharacteristics (e.g., ensure that particular places are not\nselected for restoration, ensure that priority areas form a\nsingle contiguous network). Furthermore, multiple near-optimal\nsolutions can be generated to explore multiple options in\nrestoration planning. The package leverages the 'Choco-solver'\nsoftware to perform optimization using constraint programming\n(CP) techniques (<https://choco-solver.org/>).",
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  "Repository": "https://dimitri-justeau.r-universe.dev",
  "Date/Publication": "2025-07-02 09:07:49 UTC",
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    "add_components_constraint",
    "add_connected_constraint",
    "add_locked_out_constraint",
    "add_min_iic_constraint",
    "add_min_mesh_constraint",
    "add_nb_patches_constraint",
    "add_no_new_patch_constraint",
    "add_restorable_constraint",
    "add_settings",
    "area_to_nb_cells",
    "cell_area",
    "cell_width",
    "get_aggregation_factor",
    "get_aggregation_method",
    "get_cell_area",
    "get_constraints",
    "get_existing_habitat",
    "get_habitat_threshold",
    "get_locked_out_areas",
    "get_metadata",
    "get_objective",
    "get_original_habitat",
    "get_restorable_habitat",
    "get_settings",
    "invert_vector",
    "is_java_available",
    "nb_cell_to_area",
    "preprocess_input",
    "restopt_problem",
    "set_max_iic_objective",
    "set_max_mesh_objective",
    "set_max_nb_pus_objective",
    "set_max_restore_objective",
    "set_min_nb_patches_objective",
    "set_min_nb_pus_objective",
    "set_min_restore_objective",
    "set_no_objective"
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      "page": "add_available_areas_constraint",
      "title": "Add available areas constraint",
      "concept": [
        "constraints"
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        "add_available_areas_constraint"
      ]
    },
    {
      "page": "add_compactness_constraint",
      "title": "Add constraint to limit compactness",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_compactness_constraint"
      ]
    },
    {
      "page": "add_components_constraint",
      "title": "Add constraint to limit the number of connected components",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_components_constraint"
      ]
    },
    {
      "page": "add_connected_constraint",
      "title": "Add constraint to ensure that the selected planning units for restoration are connected.",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_connected_constraint"
      ]
    },
    {
      "page": "add_locked_out_constraint",
      "title": "Add locked out constraint",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_locked_out_constraint"
      ]
    },
    {
      "page": "add_min_iic_constraint",
      "title": "Add constraint to enforce a minimum integral index of connectivity (IIC) value",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_min_iic_constraint"
      ]
    },
    {
      "page": "add_min_mesh_constraint",
      "title": "Add constraint to enforce a minimum effective mesh size (MESH) value",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_min_mesh_constraint"
      ]
    },
    {
      "page": "add_nb_patches_constraint",
      "title": "Add constraint to limit the number of patches (habitat + restoration)",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_nb_patches_constraint"
      ]
    },
    {
      "page": "add_no_new_patch_constraint",
      "title": "Add constraint to forbid the creation of new patches.",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_no_new_patch_constraint"
      ]
    },
    {
      "page": "add_restorable_constraint",
      "title": "Add constraint to specify the available amount of surface for restoration",
      "concept": [
        "constraints"
      ],
      "topics": [
        "add_restorable_constraint"
      ]
    },
    {
      "page": "add_settings",
      "title": "Add settings",
      "topics": [
        "add_settings"
      ]
    },
    {
      "page": "area_to_nb_cells",
      "title": "Compute the number of cells corresponding to a given area.",
      "topics": [
        "area_to_nb_cells"
      ]
    },
    {
      "page": "cell_area",
      "title": "Compute the area of a cell",
      "topics": [
        "cell_area"
      ]
    },
    {
      "page": "cell_width",
      "title": "Compute the width of a cell",
      "topics": [
        "cell_width"
      ]
    },
    {
      "page": "get_aggregation_factor",
      "title": "Retrieve the aggregation factor of a restopt problem.",
      "topics": [
        "get_aggregation_factor"
      ]
    },
    {
      "page": "get_aggregation_method",
      "title": "Retrieve the aggregation method of a restopt problem.",
      "topics": [
        "get_aggregation_method"
      ]
    },
    {
      "page": "get_cell_area",
      "title": "Retrieve the aggregated cell area of a restopt problem.",
      "topics": [
        "get_cell_area"
      ]
    },
    {
      "page": "get_constraints",
      "title": "Retrieve the constraints of a restopt problem.",
      "topics": [
        "get_constraints"
      ]
    },
    {
      "page": "get_existing_habitat",
      "title": "Retrieve the existing (i.e. aggregated) habitat data.",
      "topics": [
        "get_existing_habitat"
      ]
    },
    {
      "page": "get_habitat_threshold",
      "title": "Retrieve the habitat threshold parameter of a restopt problem.",
      "topics": [
        "get_habitat_threshold"
      ]
    },
    {
      "page": "get_locked_out_areas",
      "title": "Retrieve the locked out areas of a restopt problem.",
      "topics": [
        "get_locked_out_areas"
      ]
    },
    {
      "page": "get_metadata",
      "title": "Restopt solution metadata",
      "topics": [
        "get_metadata"
      ]
    },
    {
      "page": "get_objective",
      "title": "Retrieve the optimization objective of a restopt problem.",
      "topics": [
        "get_objective"
      ]
    },
    {
      "page": "get_original_habitat",
      "title": "Retrieve the original (i.e. not aggregated) habitat data.",
      "topics": [
        "get_original_habitat"
      ]
    },
    {
      "page": "get_restorable_habitat",
      "title": "Retrieve the restorable habitat (aggregated) data.",
      "topics": [
        "get_restorable_habitat"
      ]
    },
    {
      "page": "get_settings",
      "title": "Retrieve the settings of a restopt problem.",
      "topics": [
        "get_settings"
      ]
    },
    {
      "page": "invert_vector",
      "title": "Invert a vector layer according to the extent of a restopt problem.",
      "topics": [
        "invert_vector"
      ]
    },
    {
      "page": "is_java_available",
      "title": "Is Java is available?",
      "topics": [
        "is_java_available"
      ]
    },
    {
      "page": "nb_cell_to_area",
      "title": "Compute the area corresponding to a given number of cells.",
      "topics": [
        "nb_cell_to_area"
      ]
    },
    {
      "page": "preprocess_input",
      "title": "Restopr input preprocessing function.",
      "topics": [
        "preprocess_input"
      ]
    },
    {
      "page": "print.RestoptProblem",
      "title": "Print a restoration optimization problem",
      "topics": [
        "print.RestoptProblem"
      ]
    },
    {
      "page": "restopt_problem",
      "title": "Restoration optimization problem",
      "topics": [
        "restopt_problem"
      ]
    },
    {
      "page": "restopt_solution",
      "title": "Restopt solution",
      "topics": [
        "restopt_solution"
      ]
    },
    {
      "page": "restoptr",
      "title": "'restoptr': Ecological Restoration Planning",
      "topics": [
        "restoptr-package",
        "restoptr"
      ]
    },
    {
      "page": "set_max_iic_objective",
      "title": "Set an objective to maximize the integral index of connectivity",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_max_iic_objective"
      ]
    },
    {
      "page": "set_max_mesh_objective",
      "title": "Set an objective to maximize effective mesh size",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_max_mesh_objective"
      ]
    },
    {
      "page": "set_max_nb_pus_objective",
      "title": "Set an objective to maximize the number of planning units",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_max_nb_pus_objective"
      ]
    },
    {
      "page": "set_max_restore_objective",
      "title": "Set an objective to maximize the amount restoration area.",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_max_restore_objective"
      ]
    },
    {
      "page": "set_min_nb_patches_objective",
      "title": "Set an objective to minimize the number of patches (habitat + restored areas)",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_min_nb_patches_objective"
      ]
    },
    {
      "page": "set_min_nb_pus_objective",
      "title": "Set an objective to minimize the number of planning units",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_min_nb_pus_objective"
      ]
    },
    {
      "page": "set_min_restore_objective",
      "title": "Set an objective to minimize the amount restoration area.",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_min_restore_objective"
      ]
    },
    {
      "page": "set_no_objective",
      "title": "Configure the solver to only satisfy the constraints, without optimization objective",
      "concept": [
        "objectives"
      ],
      "topics": [
        "set_no_objective"
      ]
    },
    {
      "page": "solve.RestoptProblem",
      "title": "Solve a restoration optimization problem",
      "topics": [
        "solve.RestoptProblem"
      ]
    }
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